web cellHTS2 is a front end for cellHTS2 for an end-to-end analysis of cell-based high-throughput
The online version allows to analyse single and dual channel experiments using all features of cellHTS2.
web cellHTS2 guides the user through all analysis options and outputs a HTML including a full quality
control report and a ranked hitlist.
A downloadable package for local installation can be found here.
cellHTS2 is a software package implemented in Bioconductor/R for cell-based high-throughput RNAi
The cellHTS2 package is an updated version of the cellHTS package,
offering a broader set of normalization functionality and the integration of multi-channel screens.
A set of example files can be downloaded from the online tutorial here. Additional sample files can also be found in the latest cellHTS2 source package (in source folder: inst) here.
Start of a web cellHTS2 session
Load previous session or start a new session (download example session
(For more information click here)
Step 1: Select type of experiment
Step 2: Upload and assign data files to channels and replicates (help).
Data Files can be uploaded as raw plate reader, text files in cellHTS2 format or ZIP archives (recommended). Alternatively, the
Advanced FileImporter module can be used for more complex file types (help).